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I just pulled apart my Headlight motors and cleaned everything up nice and tidy. I noticed when I put it all back together that there are two orifices that expose the gears or inward parts of the little gearboxes???
I looked at the one I have not yet done, and it is the same way. I searched all the best parts lists I could find but can not find any rubber plugs. Shouldn't there be something there to keep crap out of those little gear boxes...like some kind of plugs???
I'm having a hard time visualizing the holes you are describing.
Can you post a picture? I just rebuilt mine and can't remember holes other than the holes for the mounting screws, and I do know I didn't have rubber plugs anywhere.