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Any area I weld I remove all paint, any rust? anything down to bare metal BUT old seams have oil wicked into them from years of accumulation. It seeps out of the seams when heating in the welding process and destroys the weld.
Stick is not quit as bad but mig really hates this oil.
I certainly have had my share of problems welding seams and it takes a couple of passes before it is clean enough to get a good top coat.
Heat the contaminated area you intend to weld up with an oxy-acetylene torch beforehand. Any oil with be thoroughly baked out.
Unless I am mistaken they are made of low carbon steel, which is not (and cannot) be heat treated (hardened) in the first place so, no, it won't be annealed.
Also, you don't need to have the areas in question glowing bright orange - just enough to burn out the offending grease or oil. Let everything cool down afterward, hit it all with a wire brush for a final cleaning and you are good to go.
To my knowledge, the Powerbooks after '84 or so no longer have C3 stuff in them.