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My 11 G S AT6 had cats before the X midsection with 2.5 " pipes. My Kooks long tube have 3" collector and the X has no cats and is 3" pipes.
The 3" pipes neck down to 2.5" at the axle back to fit my NPP mufflers.
No, 3"after the cats all the way back. Does the 3"flange seal up the the factory 2.5 flange?
No. I don't see any reason to step up to 3", in fact it makes sense to step down as you get farther back. But if you really want to step up, the best way would be to get a h/x pipe and mufflers from a Z06/ZR1 and a couple 3"- 2-1/2" reducers and weld in the 3" parts after the h/x on the straight part. This is the opposite of what a lot of people have done when they switched to Z06/ZR1 manifolds and cats and left the 2-1/2" mufflers
If you are just trying to add dual tone mufflers and got a good deal on 3" from a Z06, you can cut the front pipe off the Z06 mufflers (leave about 6" of the pipe) and take it to a muffler shop.
They can cut the pipe on your stock 2 1/2 system right at the front of the muffler and then slide it into the Z06 muffler and align and weld them. You will need the NPP in a box if you want to open and close them remotely.