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The secondary fan is controlled by the switch in the passenger side head. If you have the thermomaster chip you should use Hypertech's p/n 4026 which turns the secondary fan on at 176 and off at 166.
That's the deal, the two fans are controlled separately:
-main fan is controlled only by the ECM
-aux fan is controlled only by the aux fan switch in the block below #1 & #3 plugs.
You can either use that new aux fan switch to bring on the aux fan earlier or wire the grn/wht wire from the main fan relay into the same wire on aux fan relay.
On my LT-1 (93), the Hypertech Thermomaster chip kicks both fans on at around 160. I think Chevrolet changed the way the fans were controlled on the LT-1's.