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According to GM, the LS2 waterpump has had a slight redesign that reduces the replacement interval. In essence, you should NOT have to replace it again. As far as flow, they are the same.
I would just get whatever is cheapest. You can usually find them for around 100-125 bucks shipped. I found my LS2 waterpump for 115 shipped brand new from a guy off of LS1tech.com